AI赋能蛋白质设计新时代:解锁自然未及的潜力 TED 2025-11-15

蛋白质:生命的基石与工程挑战

我的名字是Cesar Ramirez-Sarmiento,我来自智利圣地亚哥,是一名蛋白质(Proteins: 构成生物体并执行生命活动的大分子)工程师和设计师。

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My name is Cesar Ramirez-Sarmiento. I'm based in Santiago, Chile. I'm a protein engineer and designer.

蛋白质是大分子(Macromolecules: 由大量重复单元组成的复杂分子),由氨基酸(Amino acids: 构成蛋白质的基本单位)组成。

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Proteins are macromolecules, which are composed of amino acids.

它们由20种不同类型的氨基酸构成,这些氨基酸可以用字母表示。

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They are made of 20 different types of amino acids. They are represented by letters.

因此,你可以想象一个氨基酸字母表,这些氨基酸像珠子串在一起。

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So you can imagine an alphabet of amino acids, and you can imagine that these amino acids are connected to each other like beads on a string.

这使得它们能够以不同的几何形状组合在一起,从而形成特定的三维结构,正是这种结构决定了它们的功能。

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And so that allows for them to come together in different geometries. And so they get a shape. They get a three-dimensional structure that allows for them to dictate their functions.

我们有许多不同形状的蛋白质,它们在细胞中执行着各种生物功能。

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We have many different proteins with many different shapes that actually perform different biological functions in cells.

它们帮助我们消化食物,帮助离子传输以使电信号通过神经元。

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They allow us to digest food. They allow us to transport ions for... electrical signals to go through neurons.

它们还控制着不同基因的表达,从而调节我们的细胞和身体如何响应。

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They allow for the expression of different genes that regulate how our cells or how our body responds.

蛋白质是细胞的“工人”,它们就像细胞的工具箱,帮助细胞完成所有必要的工作。

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Proteins are the workers of cells. They are like a toolbox for cells to do whatever they have to do.

蛋白质已经进化了数百万年,以执行对细胞生命至关重要的功能。

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Proteins have been evolving for millions of years for performing functions that are important for cellular life.

它们已经被大自然完美地塑造成现在的样子。

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They have been perfected by nature to do what they do now.

然而,当涉及到对人类至关重要的问题时,比如塑料污染、二氧化碳问题以及健康问题,我们希望让蛋白质表现得更好。

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But when it comes to problems that are important for humankind, like plastic contamination, carbon dioxide, problems in health. We want to make them better.

我们没有一千年时间去等待它们自然进化,我们必须现在就行动。

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We just don't have a thousand years to wait for it. We have to do it now.

简而言之,蛋白质工程(Protein engineering: 改变蛋白质氨基酸序列以优化其功能或创造新功能的科学领域)就是思考你是否能改变蛋白质的氨基酸组成,并通过这样做来改善其某些特性。

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Protein engineering, in short, it's asking yourself if you can change the amino acid composition of your protein, and by doing so, if you can get improvements in some properties of that protein.

我们可以为此使用不同的工具,包括实验方法和计算方法。

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We can use different tools for that. We can use experimental approaches. We can use computational approaches.

但总的来说,它们都是通过改变构成蛋白质的氨基酸序列来改善这些特性。

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But overall what they are doing is that they are changing this sequence of amino acids that compose proteins in order to improve these properties.

这就像给大自然一个小小的推动。

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This is like giving nature a little push.

人工智能带来的革命性突破

而这正是人工智能(Artificial intelligence: 模拟人类智能以解决问题和执行任务的技术)发挥作用的地方。

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And that's where the use of artificial intelligence comes in.

在过去的五年里,我们在利用人工智能设计蛋白质方面取得了前所未有的突破。

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In the last five years, we have seen breakthroughs in artificial intelligence for designing proteins that we never imagined.

它们使我们能够设计出新的蛋白质结构和形状,这些结构和形状编码着定制的功能,以解决各种各样的问题。

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They allow us for designing new protein structures, new protein shapes that encode bespoke functions for solving all types of problems.

在人工智能出现之前,蛋白质设计的成功率大约只有1%甚至更低,这意味着如果你创造了100种具有不同序列的蛋白质,可能只有一种能起作用。

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Before the advent of AI, the success rate for protein design was about 1% or less, which means if you created 100 proteins with 100 different sequences, maybe one of them would work.

现在,随着人工智能的到来,我们看到了大约10%到20%的成功率。

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Now with the advent of AI, we see about 10 to 20%.

这意味着如果你现在在计算机中生成100个序列,其中大约20个将实际具有所需的活性,并且有些甚至会比你正在研究的蛋白质的原始输入序列更好。

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So if you now take your 100 sequences that you generated in the computer, about 20 of them will actually have the desired activity, and some of them will be actually better than the input sequences of the protein of interest that you're working with.

科学的创造力与拉丁美洲的未来愿景

当我还是个孩子的时候,我对艺术很感兴趣,因为它提供了创造性的空间。

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When I was a kid, I was interested in arts because it was allowing for a space for creativity.

但后来上高中时,我选择了科学,因为我看到通过追求科学,我可以为社会带来更大的福祉,而不是艺术。

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But then when I was in high school, I opted for science because I saw that I could provide much more for the benefit of society by pursuing science instead of arts. in my case.

但我认为这两种学科实际上都是创造力的游乐场。

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But I think both disciplines are actually playgrounds for creativity.

对于科学而言,人工智能是另一种工具,可以为各种问题提供创造性的解决方案。

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For science, artificial intelligence is another tool for coming with creative solutions for different problems.

我对蛋白质工程的梦想未来是,在拉丁美洲拥有一个强大的蛋白质工程师和设计师社区,这样我们就能为我们国家特有的问题创造解决方案。

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My dream future for protein engineering is that we have a strong community of protein engineers and designers in Latin America so that we can create solutions for problems that are specific to our countries.

我们通常并不完全了解世界其他地方在利用人工智能进行蛋白质工程和设计方面的进展。

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We are usually not fully aware of the advances of the use of artificial intelligence for producing engineering and design that is happening in other parts of the world.

但与此同时,我们有许多人对创造新产品感兴趣。

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But at the same time, we have many people that are interested in creating new produce.

因此,在智利工作的想法是,我们实际上可以培养出一批能够解决这些问题的关键科学家。

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And so the idea of working in Chile is that we can actually create a critical mass of scientists that can work on these problems.

我们正在努力教育拉丁美洲的下一代科学家,教他们如何使用这些工具。

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We are actually working on how to educate the next generation of scientists from Latin America and how to use these tools.

我一直坚信,我们必须齐心协力,才能做出比我们个人能力更大的事情。

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I always had this belief that we had to come together to try to do something bigger than what we can do as individuals.

我们可以思考大自然中我们从未见过的其他组成方式。

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We can think about other compositions of nature that we haven't seen before.

就蛋白质而言,我们可以探索大自然尚未触及的未开发领域。

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In the case of proteins, we can navigate untapped terrain that nature hasn't explored yet.

我们可以穿越不同蛋白质结构和序列的“景观”,看看这些包含蛋白质结构和序列的空间是否真的能很好地解决人类面临的最紧迫问题。

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we can navigate through those landscapes of different protein structures, different protein sequences, and see whether those spaces that contain these protein structures and sequences are actually good for resolving the issues that are the most pressing problems for humankind.

📌 文中提及的人物和组织

公司/组织: TED